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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 1 | Angry Eyes | Oct 9, 2004 | Canon |
| 2 | PHASE-02: THOSE WHO CALL FOR WAR | Oct 16, 2004 | Canon |
| 3 | PHASE-03: WARNING SHOTS | Oct 30, 2004 | Canon |
| 4 | PHASE-04: STARDUST BATTLEFIELD | Nov 6, 2004 | Canon |
| 5 | PHASE-05: SCARS THAT WON'T HEAL | Nov 13, 2004 | Canon |
| 6 | PHASE-06: THE END OF THE WORLD | Nov 20, 2004 | Canon |
| 7 | PHASE-07: LAND OF CONFUSION | Nov 7, 2004 | Canon |
| 8 | PHASE-08: JUNCTION | Dec 4, 2004 | Canon |
| 9 | PHASE-09: BARED FANGS | Dec 11, 2004 | Canon |
| 10 | PHASE-10: A FATHER'S SPELL | Dec 18, 2004 | Canon |
| 11 | PHASE-11: THE CHOSEN PATH | Dec 25, 2004 | Canon |
| 12 | PHASE-12: BLOOD IN THE WATER | Dec 25, 2003 | Canon |
| 13 | PHASE-13: RESURRECTED WINGS | Jan 8, 2005 | Canon |
| 14 | PHASE-14: FLIGHT TO TOMORROW | Jan 15, 2005 | Canon |
| 15 | PHASE-15: RETURN TO THE BATTLEFIELD | Jan 22, 2005 | Canon |
| 16 | PHASE-16: STRUGGLE IN THE INDIAN OCEAN | Feb 5, 2005 | Canon |
| 17 | PHASE-17: THE SOLDIER'S LIFE | Feb 12, 2005 | Canon |
| 18 | PHASE-18: ATTACK THE LOHENGRIN | Feb 19, 2005 | Canon |
| 19 | PHASE-19: THE HIDDEN TRUTH | Feb 26, 2005 | Canon |
| 20 | PHASE-20: PAST | Mar 5, 2005 | Canon |
| 21 | PHASE-21: WANDERING EYES | Mar 12, 2005 | Canon |
| 22 | PHASE-22: SWORD OF THE BLUE SKIES | Mar 19, 2005 | Canon |
| 23 | PHASE-23: THE SHADOWS OF WAR | Mar 26, 2005 | Canon |
| 24 | PHASE-24: DIFFERING VIEWS | Apr 2, 2005 | Canon |
| 25 | PHASE-25: THE PLACE OF SIN | Apr 9, 2005 | Canon |
| 26 | PHASE-26: THE PROMISE | Apr 16, 2005 | Canon |
| 27 | PHASE-27: UNFULFILLED FEELINGS | Apr 23, 2005 | Canon |
| 28 | PHASE-28: SURVIVORS AND SACRIFICES | Apr 30, 2005 | Canon |
| 29 | PHASE-29: FATES | May 7, 2005 | Canon |
| 30 | PHASE-30: A FLEETING DREAM | May 14, 2005 | Canon |
| 31 | PHASE-31: THE ENDLESS NIGHT | May 21, 2005 | Canon |
| 32 | PHASE-32: STELLA | May 28, 2005 | Canon |
| 33 | PHASE-33: THE WORLD REVEALED | Jun 4, 2005 | Canon |
| 34 | PHASE-34: NIGHTMARE | Jun 16, 2005 | Canon |
| 35 | PHASE-35: EVE OF CHAOS | Jun 18, 2005 | Canon |
| 36 | PHASE-36: ATHRUN ON THE RUN | Jun 25, 2005 | Canon |
| 37 | PHASE-37: THUNDER IN THE DARK | Jul 2, 2005 | Canon |
| 38 | PHASE-38: A NEW FLAG | Jul 9, 2005 | Canon |
| 39 | PHASE-39: KIRA OF THE SKIES | Jul 16, 2005 | Canon |
| 40 | PHASE-40: LEGACY OF GOLD | Jul 23, 2005 | Canon |
| 41 | PHASE-41: REFRAIN | Jul 30, 2005 | Canon |
| 42 | PHASE-42: FREEDOM AND JUSTICE | Aug 6, 2005 | Canon |
| 43 | PHASE-43: A CALL FOR COUNTERATTACK | Aug 13, 2005 | Canon |
| 44 | PHASE-44: LACUS TIMES TWO | Aug 20, 2005 | Canon |
| 45 | PHASE-45: PRELUDE TO REVOLUTION | Aug 27, 2005 | Canon |
| 46 | PHASE-46: THE SONG OF TRUTH | Sep 3, 2005 | Canon |
| 47 | PHASE-47: MEER | Sep 10, 2005 | Canon |
| 48 | PHASE-48: TO A NEW WORLD | Sep 17, 2005 | Canon |
| 49 | PHASE-49: REY | Sep 24, 2005 | Canon |
| 50 | PHASE-50: THE FINAL POWER | Oct 1, 2005 | Canon |