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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 1 | The Heart of the Cards | Apr 18, 2000 | Canon |
| 2 | The Gauntlet Is Thrown | Apr 25, 2000 | Canon |
| 3 | Journey to the Duelist Kingdom | May 5, 2000 | Canon |
| 4 | Into the Hornet's Nest | May 9, 2000 | Canon |
| 5 | The Ultimate Great Moth | May 16, 2000 | Canon |
| 6 | First Duel | May 23, 2000 | Canon |
| 7 | Attack from the Deep | May 30, 2000 | Canon |
| 8 | Everything's Relative | Jun 6, 2000 | Canon |
| 9 | Duel with a Ghoul | Jun 13, 2000 | Canon |
| 10 | Give up the Ghost | Jun 20, 2000 | Canon |
| 11 | The Dueling Monkey | Jun 27, 2000 | Canon |
| 12 | Trial by Red-Eyes | Jul 4, 2000 | Canon |
| 13 | Evil Spirit of the Ring | Jul 11, 2000 | Filler |
| 14 | The Light at the End of the Tunnel | Jul 25, 2000 | Canon |
| 15 | Winning Through Intimidation | Aug 1, 2000 | Canon |
| 16 | The Scars of Defeat | Aug 8, 2000 | Canon |
| 17 | Arena of Lost Souls, Part 1 | Aug 15, 2000 | Canon |
| 18 | Arena of Lost Souls, Part 2 | Aug 22, 2000 | Canon |
| 19 | Double Trouble Duel, Part 1 | Aug 29, 2000 | Canon |
| 20 | Double Trouble Duel, Part 2 | Sep 5, 2000 | Canon |
| 21 | Double Trouble Duel, Part 3 | Sep 12, 2000 | Canon |
| 22 | Face Off, Part 1 | Sep 19, 2000 | Canon |
| 23 | Face Off, Part 2 | Sep 26, 2000 | Canon |
| 24 | Face Off, Part 3 | Oct 3, 2000 | Canon |
| 25 | Shining Friendship | Oct 10, 2000 | Filler |
| 26 | Champion vs. Creator, Part 1 | Oct 17, 2000 | Canon |
| 27 | Champion vs. Creator, Part 2 | Oct 24, 2000 | Canon |
| 28 | The Night Before | Oct 31, 2000 | Canon |
| 29 | Duel Identity, Part 1 | Nov 7, 2000 | Canon |
| 30 | Duel Identity, Part 2 | Nov 14, 2000 | Canon |
| 31 | Keith's Machinations, Part 1 | Nov 21, 2000 | Canon |
| 32 | Keith's Machinations, Part 2 | Nov 28, 2000 | Canon |
| 33 | Best of Friends, Best of Duelists, Part 1 | Dec 5, 2000 | Filler |
| 34 | Best of Friends, Best of Duelists, Part 2 | Dec 12, 2000 | Canon |
| 35 | Yugi vs. Pegasus: Match of the Millennium, Part 1 | Dec 19, 2000 | Canon |
| 36 | Yugi vs. Pegasus: Match of the Millennium, Part 2 | Dec 26, 2000 | Canon |
| 37 | Yugi vs. Pegasus: Match of the Millennium, Part 3 | Jan 9, 2001 | Canon |
| 38 | Yugi vs. Pegasus: Match of the Millennium, Part 4 | Jan 16, 2001 | Canon |
| 39 | Yugi vs. Pegasus: Match of the Millennium, Part 5 | Jan 23, 2001 | Canon |
| 40 | Aftermath | Jan 30, 2001 | Canon |
| 41 | The Wrath of Rebecca | Feb 6, 2001 | Filler |
| 42 | The Ties of Friendship | Feb 13, 2001 | Filler |
| 43 | Legendary Heroes, Part 1 | Feb 20, 2001 | Filler |
| 44 | Legendary Heroes, Part 2 | Feb 27, 2001 | Filler |
| 45 | Legendary Heroes, Part 3 | Mar 6, 2001 | Filler |
| 46 | Dungeon Dice Monsters, Part 1 | Mar 13, 2001 | Canon |
| 47 | Dungeon Dice Monsters, Part 2 | Mar 20, 2001 | Canon |
| 48 | Dungeon Dice Monsters, Part 3 | Mar 27, 2001 | Canon |
| 49 | Dungeon Dice Monsters, Part 4 | Apr 3, 2001 | Canon |
| 50 | The Mystery Duelist, Part 1 | Apr 10, 2001 | Canon |
| 51 | The Mystery Duelist, Part 2 | Apr 17, 2001 | Canon |
| 52 | The Past is Present | Apr 24, 2001 | Canon |
| 53 | Steppin' Out | May 1, 2001 | Canon |
| 54 | Obelisk the Tormentor | May 8, 2001 | Canon |
| 55 | Stalked by the Rare Hunters | May 15, 2001 | Canon |
| 56 | Yugi VS the Rare Hunter, Part 1 | May 22, 2001 | Canon |
| 57 | Yugi VS the Rare Hunter, Part 2 | May 29, 2001 | Canon |
| 58 | Espa Roba — The ESP Duelist, Part 1 | Jun 5, 2001 | Canon |
| 59 | Espa Roba — The ESP Duelist, Part 2 | Jun 12, 2001 | Canon |
| 60 | The Master of Magicians, Part 1 | Jun 19, 2001 | Canon |
| 61 | The Master of Magicians, Part 2 | Jun 26, 2001 | Canon |
| 62 | The Master of Magicians, Part 3 | Jul 3, 2001 | Canon |
| 63 | Playing with a Parasite, Part 1 | Jul 10, 2001 | Canon |
| 64 | Playing with a Parasite, Part 2 | Jul 17, 2001 | Canon |
| 65 | Mime Control, Part 1 | Jul 24, 2001 | Canon |
| 66 | Mime Control, Part 2 | Jul 31, 2001 | Canon |
| 67 | Mime Control, Part 3 | Aug 7, 2001 | Canon |
| 68 | Legendary Fisherman, Part 1 | Aug 14, 2001 | Canon |
| 69 | Legendary Fisherman, Part 2 | Aug 21, 2001 | Canon |
| 70 | Double Duel, Part 1 | Aug 28, 2001 | Canon |
| 71 | Double Duel, Part 2 | Sep 4, 2001 | Canon |
| 72 | Double Duel, Part 3 | Sep 11, 2001 | Canon |
| 73 | Double Duel, Part 4 | Sep 18, 2001 | Canon |
| 74 | The Rescue | Sep 25, 2001 | Canon |
| 75 | Friends 'Til the End, Part 1 | Oct 2, 2001 | Canon |
| 76 | Friends 'Til the End, Part 2 | Oct 9, 2001 | Canon |
| 77 | Friends 'Til the End, Part 3 | Oct 16, 2001 | Canon |
| 78 | Friends 'Til the End, Part 4 | Oct 23, 2001 | Canon |
| 79 | Shadow of a Duel | Oct 30, 2001 | Canon |
| 80 | Lights, Camera, Duel | Nov 6, 2001 | Filler |
| 81 | Let the Finals Begin! | Nov 13, 2001 | Canon |
| 82 | The Dark Spirit Revealed, Part 1 | Nov 27, 2001 | Canon |
| 83 | The Dark Spirit Revealed, Part 2 | Nov 27, 2001 | Canon |
| 84 | The Dark Spirit Revealed, Part 3 | Nov 27, 2001 | Canon |
| 85 | Rage of the Egyptian Gods | Dec 4, 2001 | Canon |
| 86 | Awakening of Evil, Part 1 | Dec 11, 2001 | Canon |
| 87 | Awakening of Evil, Part 2 | Dec 18, 2001 | Canon |
| 88 | Awakening of Evil, Part 3 | Dec 25, 2001 | Canon |
| 89 | Awakening of Evil, Part 4 | Jan 8, 2002 | Canon |
| 90 | Mind Game, Part 1 | Jan 15, 2002 | Canon |
| 91 | Mind Game, Part 2 | Jan 22, 2002 | Canon |
| 92 | Mind Game, Part 3 | Jan 29, 2002 | Canon |
| 93 | A Duel with Destiny, Part 1 | Feb 5, 2002 | Canon |
| 94 | A Duel with Destiny, Part 2 | Feb 12, 2002 | Canon |
| 95 | The Tomb-Keeper's Secret | Feb 19, 2002 | Canon |
| 96 | Showdown in the Shadows, Part 1 | Feb 26, 2002 | Canon |
| 97 | Showdown in the Shadows, Part 2 | Mar 5, 2002 | Canon |
| 98 | A Virtual Nightmare! | Mar 12, 2002 | Filler |
| 99 | Isolated in Cyber Space — Part 1 | Mar 19, 2002 | Filler |
| 100 | Isolated in Cyber Space — Part 2 | Mar 26, 2002 | Filler |