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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 1 | The Handsome Swordsman of Legend: A Man who Fights for Love | Jan 10, 1996 | Canon |
| 2 | Kid Samurai: A Big Ordeal and a New Student | Jan 17, 1996 | Canon |
| 3 | Swordsman of Sorrow: The Man Who Slays His Past | Jan 24, 1996 | Canon |
| 4 | Bad! Introducing Sanosuke, Fighter-for-hire | Jan 31, 1996 | Canon |
| 5 | The Reverse-blade Sword vs. the Zanbatou: Beyond the Battle | Feb 7, 1996 | Canon |
| 6 | The Appearance of Kurogasa: Visitor from the Shadows | Feb 14, 1996 | Canon |
| 7 | Deathmatch under the Moon! Protect the One You Love | Feb 21, 1996 | Canon |
| 8 | A New Battle! The Mysterious Beauty From Nowhere | Feb 28, 1996 | Canon |
| 9 | The Strongest Group of Ninjas: The Horrible Oniwaban Group | Mar 6, 1996 | Canon |
| 10 | Aoshi: Someone so Beautiful it's Frightening | Mar 13, 1996 | Canon |
| 11 | Farewell, the Strongest Men: The Clash of Light and Shadow | Apr 24, 1996 | Canon |
| 12 | Birth of a Boy Swordsman: The Battle of First Apprentice Yahiko | May 1, 1996 | Canon |
| 13 | Strive for the Grand Championship: Toramaru's Sumo Battle Log! | May 8, 1996 | Filler |
| 14 | To Save a Small Life: Lady Doctor Megumi to the Rescue | May 15, 1996 | Filler |
| 15 | Two Legendary Manslayers, Two Legendary Slashers! | May 22, 1996 | Filler |
| 16 | A Promise From the Heart! The Secret Sword Technique of Shiden. | Jun 5, 1996 | Filler |
| 17 | Fly to Your Dreams! Marimo, The Human Cannon. | Jun 12, 1996 | Filler |
| 18 | Run Yahiko: Get the Reverse-Edged Sword Back! | Jun 19, 1996 | Filler |
| 19 | Raijuta's Ambition: The Fantasy of the Forbidden Kingdom. | Jun 26, 1996 | Canon |
| 20 | Revival of the Killer Sword: Shinko Style! | Jul 10, 1996 | Canon |
| 21 | Destruction of a Nightmare | Jul 17, 1996 | Canon |
| 22 | Surprise Incident on a Runaway Locomotive | Jul 31, 1996 | Filler |
| 23 | Sanosuke's Betrayal!? The Fateful Reunion | Aug 14, 1996 | Canon |
| 24 | Midnight Battle: Kenshin vs Sanosuke Revisited! | Aug 21, 1996 | Canon |
| 25 | The Red Pirate: Kenshin and Kaoru Separated | Aug 28, 1996 | Filler |
| 26 | Lightning Incarnate: Shura, The Mysterious Female Pirate! | Sep 4, 1996 | Filler |
| 27 | Burn, Island of Terror! The Red Pirate: Conclusion | Oct 16, 1996 | Filler |
| 28 | Prelude To a New Threat, The Shadow of the Wolf is drawing near | Oct 30, 1996 | Canon |
| 29 | The Ultimate Fatal Rival! The Waylay of the Desperate Fang | Nov 6, 1996 | Canon |
| 30 | Evil Monster of Revenge,... Shishio Makoto's Plot! | Nov 13, 1996 | Canon |
| 31 | Never Reaching Feelings... Kenshin's Departure | Nov 27, 1996 | Canon |
| 32 | Changing Tears to Courage! The Path Choosen by Kamiya Kaoru | Dec 4, 1996 | Canon |
| 33 | Time to Be the Strongest Warrior! Aoshi's New Battle | Dec 11, 1996 | Canon |
| 34 | The Little Thief,... Makimachi Misao's Deceptive Looks | Jan 8, 1997 | Canon |
| 35 | Occupied Village! Shishio's Evil Shadow, Ever Closer! | Jan 15, 1997 | Canon |
| 36 | After The End of The Dynasty, First Meeting of Kenshin and Shishio | Jan 22, 1997 | Canon |
| 37 | Shock! Sakabatou Broken,.. Soujiro "The Heavenly Sword" vs Kenshin | Jan 29, 1997 | Canon |
| 38 | Sanosuke, The Secret of Patience,... Challenge the Hakai-Priest, Anji | Feb 5, 1997 | Canon |
| 39 | The man who makes Sakaba,... Shat-ku Arai's masterpiece | Feb 12, 1997 | Canon |
| 40 | Cold-blooded, Samurai battle with Ju-Pon Gatana, Cho | Feb 19, 1997 | Canon |
| 41 | Hidden Technique of Hiten Mitsurugi Ryu! Reunion with Master Seijuro Hiko | Feb 26, 1997 | Canon |
| 42 | The Formation of an Alliance | Mar 5, 1997 | Canon |
| 43 | Between Life and Death, Succession Technique Mastered. | Mar 12, 1997 | Canon |
| 44 | A Decisive Battle Like Violent Waters | Mar 19, 1997 | Canon |
| 45 | As if to Fly | Apr 16, 1997 | Canon |
| 46 | Purgatory Bursts into Flames | Apr 23, 1997 | Canon |
| 47 | Crash! The Lethal Punch, Futae no Kiwami | Apr 30, 1997 | Canon |
| 48 | Reborn to Salvation | May 14, 1997 | Canon |
| 49 | The Wolf Destroys the Shingan | May 28, 1997 | Canon |
| 50 | The Promised Time has Come | Jun 4, 1997 | Canon |
| 51 | Wake up Now! | Jun 11, 1997 | Canon |
| 52 | To make a Miracle | Jun 18, 1997 | Canon |
| 53 | The Giant vs Superman | Jun 25, 1997 | Canon |
| 54 | Hiten vs Shukuchi | Jul 2, 1997 | Canon |
| 55 | The Tragedy of a Stormy Night | Jul 9, 1997 | Canon |
| 56 | A Duel With an Extreme Moment | Jul 16, 1997 | Canon |
| 57 | Two Men at the End of an Era | Aug 6, 1997 | Canon |
| 58 | The Age Chooses Shishio? | Aug 13, 1997 | Canon |
| 59 | Not Out of Luck! | Aug 20, 1997 | Canon |
| 60 | The Man who is Chosen for Victory | Sep 3, 1997 | Canon |
| 61 | The Juppongatana who Remain | Sep 10, 1997 | Canon |
| 62 | Kyoto, the Engraved Memory | Sep 17, 1997 | Canon |
| 63 | The Legend of the Fireflies | Oct 14, 1997 | Filler |
| 64 | The Birth of Prince Yahiko? | Oct 28, 1997 | Filler |
| 65 | Find the Lost Treasure! | Nov 4, 1997 | Filler |
| 66 | Kaoru Ecstatic! | Nov 11, 1997 | Filler |
| 67 | The Gleaming Blade of Legends | Nov 18, 1997 | Filler |
| 68 | The Medallion of Destiny | Nov 25, 1997 | Filler |
| 69 | To the Battlefield of Shimabara | Dec 2, 1997 | Filler |
| 70 | Shock of the Rairyu Sen | Dec 9, 1997 | Filler |
| 71 | Kaiou's Conspiracy | Dec 16, 1997 | Filler |
| 72 | Days of Remorse | Jan 6, 1998 | Filler |
| 73 | The Sneering Demon! | Jan 13, 1998 | Filler |
| 74 | Sanosuke's tears! | Jan 20, 1998 | Filler |
| 75 | The Last Crusade | Jan 27, 1998 | Filler |
| 76 | Bon Voyage | Feb 3, 1998 | Filler |
| 77 | Himura Dojo in Shimonoseki? | Feb 10, 1998 | Filler |
| 78 | Crush! | Feb 17, 1998 | Filler |
| 79 | Kaishu Katsu and Kenshin | Feb 24, 1998 | Filler |
| 80 | The Unending Revolution | Mar 3, 1998 | Filler |
| 81 | Conspiracy of the Beniaoi | Mar 10, 1998 | Filler |
| 82 | Kaishu Katsu's Determination | Apr 14, 1998 | Filler |
| 83 | Yutaro Returns | Apr 21, 1998 | Filler |
| 84 | The Sanada Ninja Squad and the Elixir | May 5, 1998 | Filler |
| 85 | A Straying Journey | May 19, 1998 | Filler |
| 86 | A Heat Wave From Beneath the Earth | May 26, 1998 | Filler |
| 87 | Scheneider's Bet | Jun 2, 1998 | Filler |
| 88 | The Two Guides | Jun 9, 1998 | Filler |
| 89 | To My Angel Misao | Jun 16, 1998 | Filler |
| 90 | Feng Shui, Surprise Attack! | Jun 23, 1998 | Filler |
| 91 | The Magic of Feng Shui | Jul 21, 1998 | Filler |
| 92 | Tokyo's Under Martial Law! | Aug 4, 1998 | Filler |
| 93 | The Enemy Awaits in Senjogahara | Aug 18, 1998 | Filler |
| 94 | The Elegy of Wind and Water | Sep 8, 1998 | Filler |