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Looking for filler episodes? View the filler guide.
| 4 | Trash Day — Clock Tower — Birds Flying Over the Walls | Nov 14, 2002 | Canon |
| 5 | Library — Abandoned Factory — Beginning of the World | Nov 21, 2002 | Canon |
| 6 | End of Summer — Rain — Loss | Nov 28, 2002 | Canon |
| 7 | Scar — Illness — Arrival of Winter | Nov 28, 2002 | Canon |
| 8 | The Bird | Dec 5, 2002 | Canon |
| 9 | Well — Rebirth — Riddle | Dec 5, 2002 | Canon |
| 10 | Kuramori — Haibane of Abandoned Factory — Rakka's Job | Dec 12, 2002 | Canon |
| 11 | Parting — Darkness in the Heart — Irreplaceable Thing | Dec 12, 2002 | Canon |
| 12 | Bell Nuts — Passing of the Year Festival — Reconciliation | Dec 19, 2002 | Canon |
| 13 | Reki's World — Prayer — Epilogue | Dec 19, 2002 | Canon |