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Looking for filler episodes? View the filler guide.
| # | Title | Aired | Type |
|---|---|---|---|
| 1 | Mission 2 | Jul 2, 2003 | Canon |
| 2 | Quantum Barrier | Jul 9, 2003 | Canon |
| 3 | Necromancer | Jul 16, 2003 | Canon |
| 4 | Specular | Jul 23, 2003 | Canon |
| 5 | Seraphim | Jul 30, 2003 | Canon |
| 6 | Watcher's Nest | Aug 6, 2003 | Canon |
| 7 | Quantum Core | Aug 13, 2003 | Canon |
| 8 | Alchemy | Aug 20, 2003 | Canon |
| 9 | Tragedy of Cherubim | Aug 27, 2003 | Canon |
| 10 | Divergence EVE | Sep 3, 2003 | Canon |
| 11 | Designer's Children | Sep 10, 2003 | Canon |
| 12 | Mission 1 | Sep 17, 2003 | Canon |
| 13 | Mission 3 | Sep 24, 2003 | Canon |